Removing the weatherstripping and leaving it out will radically increase wind noise inside the car. There was a POCA article in Nov newsletter reprinted from TPOC's newsletter on adjusting the doors. But you may be experiencing mis-adjustment of the window frames, not the door per se. The frames adjust as well, once the upholstered panel is removed. But screwing around with the alignment of the frames can slow down or stall the up/down motion of the power windows....
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