Perhaps you can be more specific. Based on what you have accomplished, it would seem that you have the acumen to extract the main side window apparatus. Glass removal is two nuts and rubber protected bolts and it pulls up and exit the rail toward the inside of the car. Start with it 3/4 down. Pretty easy.
The front side windows are held in by the vertical trim that is removable after finding the screw, in the upper door trim behind the seal, that holds that piece of trim in place. The fastener is right behind where the vertical trim meets the upper horizontal trim. With the trim gone, slide the 1/4 window back and out.
The question that you should be asking is "Do I remove the trim?" I have removed the trim on every restoration except the last when it was attached so tightly, it was on the threshold of damaging it in removal. I managed on piece off and it had a minor warp after the exercise. That scared me. I surrendered and left the remaining trim in place. Fortunately, the piece I removed went back on looking perfect. But, the experience gave me religion.
Kirk Evans informed me that he never removes the trim. I never appreciated that until now.
Let me know if I missed your question